IL_8FLC_036

3D structure

PDB id

8FLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FLC|1|L3|G|748, 8FLC|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLC_036 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1748

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FLC|1|L3|G|745
8FLC|1|L3|A|746
8FLC|1|L3|A|747
8FLC|1|L3|G|748
8FLC|1|L3|G|749
8FLC|1|L3|U|750
8FLC|1|L3|G|751
8FLC|1|L3|G|752
*
8FLC|1|L3|U|911
8FLC|1|L3|G|912
8FLC|1|L3|U|913
8FLC|1|L3|U|914
8FLC|1|L3|A|915
8FLC|1|L3|C|916
8FLC|1|L3|A|917
8FLC|1|L3|G|918
8FLC|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a

Chain NR

Translation machinery-associated protein 16