IL_8FLD_040

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FLD|1|L3|G|748, 8FLD|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLD_040 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1724

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FLD|1|L3|G|745
8FLD|1|L3|A|746
8FLD|1|L3|A|747
8FLD|1|L3|G|748
8FLD|1|L3|G|749
8FLD|1|L3|U|750
8FLD|1|L3|G|751
8FLD|1|L3|G|752
*
8FLD|1|L3|U|911
8FLD|1|L3|G|912
8FLD|1|L3|U|913
8FLD|1|L3|U|914
8FLD|1|L3|A|915
8FLD|1|L3|C|916
8FLD|1|L3|A|917
8FLD|1|L3|G|918
8FLD|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a