IL_8FLD_071

3D structure

PDB id

8FLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

U(PSU)UG*C(A2M)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLD_071 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.3004

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8FLD|1|L3|U|1861
8FLD|1|L3|PSU|1862
8FLD|1|L3|U|1863
8FLD|1|L3|G|1864
*
8FLD|1|L3|C|1870
8FLD|1|L3|A2M|1871
8FLD|1|L3|G|1872
8FLD|1|L3|A|1873

Current chains

Chain L3

28S rRNA

Nearby chains