IL_8FLE_036

3D structure

PDB id

8FLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FLE|1|L3|G|748, 8FLE|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLE_036 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1703

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FLE|1|L3|G|745
8FLE|1|L3|A|746
8FLE|1|L3|A|747
8FLE|1|L3|G|748
8FLE|1|L3|G|749
8FLE|1|L3|U|750
8FLE|1|L3|G|751
8FLE|1|L3|G|752
*
8FLE|1|L3|U|911
8FLE|1|L3|G|912
8FLE|1|L3|U|913
8FLE|1|L3|U|914
8FLE|1|L3|A|915
8FLE|1|L3|C|916
8FLE|1|L3|A|917
8FLE|1|L3|G|918
8FLE|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a