IL_8FLF_178

3D structure

PDB id

8FLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State L3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLF_178 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.1064

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8FLF|1|L3|G|2358
8FLF|1|L3|U|2359
8FLF|1|L3|A|2360
8FLF|1|L3|G|2361
8FLF|1|L3|U|2362
8FLF|1|L3|A2M|2363
8FLF|1|L3|OMG|2364
*
8FLF|1|L3|C|3858
8FLF|1|L3|G|3859
8FLF|1|L3|A|3860
8FLF|1|L3|A|3861
8FLF|1|L3|A|3862
8FLF|1|L3|C|3863

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain SA

60S ribosomal protein L4

Chain SR

GTP-binding protein 4