IL_8FOM_021

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8FOM|1|QA|A|532, 8FOM|1|QA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_021 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.15

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8FOM|1|QA|G|515
8FOM|1|QA|U|516
8FOM|1|QA|G|517
8FOM|1|QA|C|518
8FOM|1|QA|C|519
8FOM|1|QA|A|520
8FOM|1|QA|G|521
*
8FOM|1|QA|C|528
8FOM|1|QA|G|529
8FOM|1|QA|G|530
8FOM|1|QA|U|531
8FOM|1|QA|A|532
8FOM|1|QA|A|533
8FOM|1|QA|U|534
8FOM|1|QA|A|535
8FOM|1|QA|C|536

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12