IL_8FOM_222

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_222 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1532

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8FOM|1|XA|C|1303
8FOM|1|XA|G|1304
8FOM|1|XA|G|1305
8FOM|1|XA|A|1306
8FOM|1|XA|U|1307
8FOM|1|XA|U|1308
*
8FOM|1|XA|A|1329
8FOM|1|XA|U|1330
8FOM|1|XA|G|1331
8FOM|1|XA|A|1332
8FOM|1|XA|A|1333
8FOM|1|XA|G|1334

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein Thx