IL_8FOM_268

3D structure

PDB id

8FOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

8FOM|1|YA|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FOM_268 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.0987

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8FOM|1|YA|C|998
8FOM|1|YA|U|999
8FOM|1|YA|A|1000
8FOM|1|YA|A|1001
8FOM|1|YA|G|1002
*
8FOM|1|YA|C|1153
8FOM|1|YA|G|1154
8FOM|1|YA|A|1155
8FOM|1|YA|A|1156
8FOM|1|YA|G|1157

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YU

50S ribosomal protein L20