IL_8FON_235

3D structure

PDB id

8FON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FON_235 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.1758

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8FON|1|XA|C|1533
8FON|1|XA|A|1534
8FON|1|XA|C|1535
*
8FON|1|XX|G|-8
8FON|1|XX|A|-7
8FON|1|XX|G|-6

Current chains

Chain XA

16S rRNA

Chain XX

mRNA

Nearby chains

Chain XK

30S ribosomal protein S11