IL_8FR8_013
3D structure
- PDB id
- 8FR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- GUAC*GAGUGAAAGAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 8FR8|1|A|G|591, 8FR8|1|A|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FR8_013 not in the Motif Atlas
- Homologous match to IL_4WF9_015
- Geometric discrepancy: 0.2074
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
8FR8|1|A|G|569
8FR8|1|A|U|570
8FR8|1|A|A|571
8FR8|1|A|C|572
*
8FR8|1|A|G|583
8FR8|1|A|A|584
8FR8|1|A|G|585
8FR8|1|A|U|586
8FR8|1|A|G|587
8FR8|1|A|A|588
8FR8|1|A|A|589
8FR8|1|A|A|590
8FR8|1|A|G|591
8FR8|1|A|A|592
8FR8|1|A|G|593
8FR8|1|A|U|594
8FR8|1|A|A|595
8FR8|1|A|C|596
Current chains
- Chain A
- 23S rRNA (3119-MER)
Nearby chains
- Chain 1
- 50S ribosomal protein L24
- Chain Y
- 50S ribosomal protein L22
Coloring options: