IL_8FR8_040

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

8FR8|1|A|C|1260, 8FR8|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_040 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0934

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8FR8|1|A|C|1136
8FR8|1|A|U|1137
8FR8|1|A|A|1138
8FR8|1|A|A|1139
8FR8|1|A|G|1140
8FR8|1|A|U|1141
8FR8|1|A|G|1142
*
8FR8|1|A|C|1258
8FR8|1|A|U|1259
8FR8|1|A|C|1260
8FR8|1|A|A|1261
8FR8|1|A|A|1262
8FR8|1|A|G|1263

Current chains

Chain A

23S rRNA (3119-MER)

Nearby chains

Chain F

50S ribosomal protein L36

Chain P

50S ribosomal protein L6

Chain T

50S ribosomal protein L13