IL_8FR8_131

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUG*CCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_131 not in the Motif Atlas

Homologous match to IL_5E81_371

Geometric discrepancy: 0.2197

The information below is about IL_5E81_371

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8FR8|1|E|C|527
8FR8|1|E|U|528
8FR8|1|E|G|529
*
8FR8|1|E|C|540
8FR8|1|E|C|541
8FR8|1|E|A|542
8FR8|1|E|G|543

Current chains

Chain E

fMet tRNA (77-MER)

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain j

30S ribosomal protein S13