IL_8FR8_185

3D structure

PDB id

8FR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GCUG*CGAAUC

Length

10 nucleotides

Bulged bases

8FR8|1|a|U|1238, 8FR8|1|a|A|1261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FR8_185 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.1442

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8FR8|1|a|G|1236
8FR8|1|a|C|1237
8FR8|1|a|U|1238
8FR8|1|a|G|1239
*
8FR8|1|a|C|1258
8FR8|1|a|G|1259
8FR8|1|a|A|1260
8FR8|1|a|A|1261
8FR8|1|a|U|1262
8FR8|1|a|C|1263

Current chains

Chain a

16S rRNA (1511-MER)

Nearby chains

Chain 9

30S ribosomal protein S14

Chain G

30S ribosomal protein S3

Chain l

30S ribosomal protein S10