IL_8FRU_006

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_006 not in the Motif Atlas

Geometric match to IL_4V9F_008

Geometric discrepancy: 0.1532

The information below is about IL_4V9F_008

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8FRU|1|1|C|114
8FRU|1|1|G|115
8FRU|1|1|A|116
8FRU|1|1|A|117
*
8FRU|1|1|U|127
8FRU|1|1|G|128

Current chains

Chain 1

28S rRNA

Nearby chains

Chain G

60S ribosomal protein eL8

Chain N

60S ribosomal protein eL15