IL_8FRU_008
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGCC*GCG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_008 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.3129
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8FRU|1|1|C|278
8FRU|1|1|G|279
8FRU|1|1|C|280
8FRU|1|1|C|281
*
8FRU|1|4|G|31
8FRU|1|4|C|32
8FRU|1|4|G|33
Current chains
- Chain 1
- 28S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein eL13
- Chain N
- 60S ribosomal protein eL15
- Chain j
- 60S ribosomal protein eL37
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