IL_8FRU_025
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_025 not in the Motif Atlas
- Geometric match to IL_7RQB_027
- Geometric discrepancy: 0.0815
- The information below is about IL_7RQB_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.1
- Basepair signature
- cWW-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FRU|1|1|C|706
8FRU|1|1|G|707
8FRU|1|1|U|708
8FRU|1|1|A|709
8FRU|1|1|G|710
*
8FRU|1|1|C|763
8FRU|1|1|G|764
8FRU|1|1|A|765
8FRU|1|1|A|766
8FRU|1|1|G|767
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein uL30
- Chain I
- 60S ribosomal protein uL16
- Chain T
- 60S ribosomal protein eL21
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