IL_8FRU_026

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_026 not in the Motif Atlas

Geometric match to IL_4V9F_034

Geometric discrepancy: 0.1389

The information below is about IL_4V9F_034

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8FRU|1|1|G|710
8FRU|1|1|A|711
*
8FRU|1|1|U|761
8FRU|1|1|C|762
8FRU|1|1|C|763

Current chains

Chain 1

28S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain D

60S ribosomal protein uL18

Chain I

60S ribosomal protein uL16

Chain T

60S ribosomal protein eL21