IL_8FRU_027
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCGCU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_027 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.2278
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8FRU|1|1|G|712
8FRU|1|1|C|713
8FRU|1|1|G|714
8FRU|1|1|C|715
8FRU|1|1|U|716
*
8FRU|1|1|A|757
8FRU|1|1|A|758
8FRU|1|1|A|759
8FRU|1|1|C|760
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein uL18
- Chain I
- 60S ribosomal protein uL16
- Chain T
- 60S ribosomal protein eL21
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