IL_8FRU_042
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_042 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.1082
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.2
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 33
Unit IDs
8FRU|1|1|G|1174
8FRU|1|1|G|1175
8FRU|1|1|U|1176
8FRU|1|1|U|1177
*
8FRU|1|1|A|1468
8FRU|1|1|C|1469
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein eL19
- Chain X
- 60S ribosomal protein uL23
- Chain g
- 60S ribosomal protein eL34
- Chain j
- 60S ribosomal protein eL37
- Chain l
- 60S ribosomal protein eL39
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