IL_8FRU_043

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCGCC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_043 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.1516

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8FRU|1|1|G|1183
8FRU|1|1|C|1184
8FRU|1|1|G|1185
8FRU|1|1|C|1186
8FRU|1|1|C|1187
*
8FRU|1|1|G|1195
8FRU|1|1|G|1196
8FRU|1|1|C|1197

Current chains

Chain 1

28S rRNA

Nearby chains

Chain P

60S ribosomal protein uL22

Chain R

60S ribosomal protein eL19

Chain l

60S ribosomal protein eL39