IL_8FRU_059
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CGAGGG*CGCUGGCG
- Length
- 14 nucleotides
- Bulged bases
- 8FRU|1|1|G|1646, 8FRU|1|1|C|1661, 8FRU|1|1|C|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_059 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1412
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8FRU|1|1|C|1643
8FRU|1|1|G|1644
8FRU|1|1|A|1645
8FRU|1|1|G|1646
8FRU|1|1|G|1647
8FRU|1|1|G|1648
*
8FRU|1|1|C|1659
8FRU|1|1|G|1660
8FRU|1|1|C|1661
8FRU|1|1|U|1662
8FRU|1|1|G|1663
8FRU|1|1|G|1664
8FRU|1|1|C|1665
8FRU|1|1|G|1666
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain p
- 60S ribosomal protein eL43
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