IL_8FRU_063

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GACCG*CCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_063 not in the Motif Atlas

Geometric match to IL_5T83_002

Geometric discrepancy: 0.2435

The information below is about IL_5T83_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_83497.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8FRU|1|1|G|1692
8FRU|1|1|A|1693
8FRU|1|1|C|1694
8FRU|1|1|C|1695
8FRU|1|1|G|1696
*
8FRU|1|1|C|1721
8FRU|1|1|C|1722
8FRU|1|1|C|1723

Current chains

Chain 1

28S rRNA

Nearby chains