IL_8FRU_067
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGUG
- Length
- 16 nucleotides
- Bulged bases
- 8FRU|1|1|A|1767, 8FRU|1|1|C|1773, 8FRU|1|1|U|1792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_067 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.2647
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8FRU|1|1|C|1763
8FRU|1|1|C|1764
8FRU|1|1|A|1765
8FRU|1|1|A|1766
8FRU|1|1|A|1767
8FRU|1|1|U|1768
8FRU|1|1|G|1769
8FRU|1|1|C|1770
8FRU|1|1|C|1771
8FRU|1|1|U|1772
8FRU|1|1|C|1773
8FRU|1|1|G|1774
*
8FRU|1|1|C|1790
8FRU|1|1|G|1791
8FRU|1|1|U|1792
8FRU|1|1|G|1793
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain n
- 60S ribosomal protein eL41
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