IL_8FRU_073

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GG*CCGC

Length

6 nucleotides

Bulged bases

8FRU|1|1|G|1987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_073 not in the Motif Atlas

Geometric match to IL_6IV9_001

Geometric discrepancy: 0.3599

The information below is about IL_6IV9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

8FRU|1|1|G|1929
8FRU|1|1|G|1930
*
8FRU|1|1|C|1985
8FRU|1|1|C|1986
8FRU|1|1|G|1987
8FRU|1|1|C|1988

Current chains

Chain 1

28S rRNA

Nearby chains

Chain i

60S ribosomal protein eL36