IL_8FRU_090
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCAGUAC*GGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_090 not in the Motif Atlas
- Geometric match to IL_4V9F_092
- Geometric discrepancy: 0.1204
- The information below is about IL_4V9F_092
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8FRU|1|1|C|2435
8FRU|1|1|C|2436
8FRU|1|1|A|2437
8FRU|1|1|G|2438
8FRU|1|1|U|2439
8FRU|1|1|A|2440
8FRU|1|1|C|2441
*
8FRU|1|1|G|2446
8FRU|1|1|G|2447
8FRU|1|1|A|2448
8FRU|1|1|A|2449
8FRU|1|1|C|2450
8FRU|1|1|G|2451
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein uL6
- Chain V
- 60S ribosomal protein uL14
- Chain m
- 60S ribosomal protein eL40
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