IL_8FRU_091

3D structure

PDB id

8FRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S subunit of the Giardia lamblia 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCGCC*GCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FRU_091 not in the Motif Atlas

Geometric match to IL_4JRC_003

Geometric discrepancy: 0.1231

The information below is about IL_4JRC_003

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8FRU|1|1|C|2463
8FRU|1|1|C|2464
8FRU|1|1|G|2465
8FRU|1|1|C|2466
8FRU|1|1|C|2467
*
8FRU|1|1|G|2506
8FRU|1|1|C|2507
8FRU|1|1|G|2508

Current chains

Chain 1

28S rRNA

Nearby chains

Chain B

60S ribosomal protein uL3

Chain V

60S ribosomal protein uL14

Chain W

60S ribosomal protein eL24