IL_8FRU_093
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CCCCG*CGCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_093 not in the Motif Atlas
- Geometric match to IL_4WF9_102
- Geometric discrepancy: 0.2968
- The information below is about IL_4WF9_102
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FRU|1|1|C|2470
8FRU|1|1|C|2471
8FRU|1|1|C|2472
8FRU|1|1|C|2473
8FRU|1|1|G|2474
*
8FRU|1|1|C|2499
8FRU|1|1|G|2500
8FRU|1|1|C|2501
8FRU|1|1|C|2502
8FRU|1|1|G|2503
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein uL3
- Chain W
- 60S ribosomal protein eL24
- Chain d
- 60S ribosomal protein eL31
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