IL_8FRU_106
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCCAGUAC*GGAACAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FRU_106 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2317
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8FRU|1|3|G|71
8FRU|1|3|C|72
8FRU|1|3|C|73
8FRU|1|3|A|74
8FRU|1|3|G|75
8FRU|1|3|U|76
8FRU|1|3|A|77
8FRU|1|3|C|78
*
8FRU|1|3|G|98
8FRU|1|3|G|99
8FRU|1|3|A|100
8FRU|1|3|A|101
8FRU|1|3|C|102
8FRU|1|3|A|103
8FRU|1|3|C|104
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S ribosomal protein uL18
- Chain F
- 60S ribosomal protein uL30
- Chain I
- 60S ribosomal protein uL16
- Chain S
- 60S ribosomal protein eL20
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