IL_8FTO_057

3D structure

PDB id

8FTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with an improved MS2 tag inserted in H98

Experimental method

ELECTRON MICROSCOPY

Resolution

1.85 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FTO_057 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0754

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FTO|1|A|C|1303
8FTO|1|A|G|1304
8FTO|1|A|G|1305
8FTO|1|A|A|1306
8FTO|1|A|U|1307
8FTO|1|A|U|1308
*
8FTO|1|A|A|1329
8FTO|1|A|U|1330
8FTO|1|A|G|1331
8FTO|1|A|A|1332
8FTO|1|A|A|1333
8FTO|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13