3D structure

PDB id
8FZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UUAAGUG*CUAAA
Length
12 nucleotides
Bulged bases
8FZD|1|A|A|1143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZD_035 not in the Motif Atlas
Homologous match to IL_5J7L_280
Geometric discrepancy: 0.0911
The information below is about IL_5J7L_280
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

8FZD|1|A|U|1018
8FZD|1|A|U|1019
8FZD|1|A|A|1020
8FZD|1|A|A|1021
8FZD|1|A|G|1022
8FZD|1|A|U|1023
8FZD|1|A|G|1024
*
8FZD|1|A|C|1140
8FZD|1|A|U|1141
8FZD|1|A|A|1142
8FZD|1|A|A|1143
8FZD|1|A|A|1144

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain L
50S ribosomal protein L13

Coloring options:


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