IL_8FZE_069

3D structure

PDB id

8FZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8FZE|1|A|A|1801, 8FZE|1|A|C|1816, 8FZE|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZE_069 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0977

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8FZE|1|A|U|1798
8FZE|1|A|G|1799
8FZE|1|A|C|1800
8FZE|1|A|A|1801
8FZE|1|A|A|1802
8FZE|1|A|A|1803
8FZE|1|A|C|1804
*
8FZE|1|A|G|1813
8FZE|1|A|G|1814
8FZE|1|A|A|1815
8FZE|1|A|C|1816
8FZE|1|A|G|1817
8FZE|1|A|U|1818
8FZE|1|A|A|1819
8FZE|1|A|U|1820
8FZE|1|A|A|1821

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA