3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUAAGUG*CUAAA
Length
12 nucleotides
Bulged bases
8FZF|1|A|A|1143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_037 not in the Motif Atlas
Geometric match to IL_5J7L_280
Geometric discrepancy: 0.0935
The information below is about IL_5J7L_280
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

8FZF|1|A|U|1018
8FZF|1|A|U|1019
8FZF|1|A|A|1020
8FZF|1|A|A|1021
8FZF|1|A|G|1022
8FZF|1|A|U|1023
8FZF|1|A|G|1024
*
8FZF|1|A|C|1140
8FZF|1|A|U|1141
8FZF|1|A|A|1142
8FZF|1|A|A|1143
8FZF|1|A|A|1144

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain L
50S ribosomal protein L13

Coloring options:


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