3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UCACU*AAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZF_110 not in the Motif Atlas
Homologous match to IL_5J7L_347
Geometric discrepancy: 0.1113
The information below is about IL_5J7L_347
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.11
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
19

Unit IDs

8FZF|1|A|U|2680
8FZF|1|A|C|2681
8FZF|1|A|A|2682
8FZF|1|A|C|2683
8FZF|1|A|U|2684
*
8FZF|1|A|A|2725
8FZF|1|A|A|2726
8FZF|1|A|A|2727

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain M
50S ribosomal protein L14
Chain P
Large ribosomal subunit protein bL17
Chain R
50S ribosomal protein L19

Coloring options:


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