3D structure

PDB id
8FZG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
8FZG|1|a|A|532, 8FZG|1|a|U|534
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZG_144 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.2402
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8FZG|1|a|G|515
8FZG|1|a|PSU|516
8FZG|1|a|G|517
8FZG|1|a|C|518
8FZG|1|a|C|519
8FZG|1|a|A|520
8FZG|1|a|G|521
*
8FZG|1|a|C|528
8FZG|1|a|G|529
8FZG|1|a|G|530
8FZG|1|a|U|531
8FZG|1|a|A|532
8FZG|1|a|A|533
8FZG|1|a|U|534
8FZG|1|a|A|535
8FZG|1|a|C|536

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12
Chain w
Peptide chain release factor 1
Chain z
F-UAA mRNA

Coloring options:


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