3D structure

PDB id
8FZG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AAGAAG*CCACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZG_183 not in the Motif Atlas
Homologous match to IL_5J7L_063
Geometric discrepancy: 0.1079
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

8FZG|1|a|A|1430
8FZG|1|a|A|1431
8FZG|1|a|G|1432
8FZG|1|a|A|1433
8FZG|1|a|A|1434
8FZG|1|a|G|1435
*
8FZG|1|a|C|1466
8FZG|1|a|C|1467
8FZG|1|a|A|1468
8FZG|1|a|C|1469
8FZG|1|a|U|1470

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain R
50S ribosomal protein L19
Chain t
30S ribosomal protein S20

Coloring options:


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