IL_8FZH_036

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8FZH|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZH_036 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0759

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8FZH|1|A|U|1018
8FZH|1|A|U|1019
8FZH|1|A|A|1020
8FZH|1|A|A|1021
8FZH|1|A|G|1022
8FZH|1|A|U|1023
8FZH|1|A|G|1024
*
8FZH|1|A|C|1140
8FZH|1|A|U|1141
8FZH|1|A|A|1142
8FZH|1|A|A|1143
8FZH|1|A|A|1144

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain L

50S ribosomal protein L13