3D structure

PDB id
8FZI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAG*CGGACC
Length
10 nucleotides
Bulged bases
8FZI|1|a|A|1257, 8FZI|1|a|A|1280, 8FZI|1|a|C|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FZI_178 not in the Motif Atlas
Homologous match to IL_5J7L_055
Geometric discrepancy: 0.188
The information below is about IL_5J7L_055
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

8FZI|1|a|G|1255
8FZI|1|a|A|1256
8FZI|1|a|A|1257
8FZI|1|a|G|1258
*
8FZI|1|a|C|1277
8FZI|1|a|G|1278
8FZI|1|a|G|1279
8FZI|1|a|A|1280
8FZI|1|a|C|1281
8FZI|1|a|C|1282

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2073 s