IL_8FZJ_068

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8FZJ|1|A|A|1801, 8FZJ|1|A|C|1816, 8FZJ|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FZJ_068 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0944

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8FZJ|1|A|U|1798
8FZJ|1|A|G|1799
8FZJ|1|A|C|1800
8FZJ|1|A|A|1801
8FZJ|1|A|A|1802
8FZJ|1|A|A|1803
8FZJ|1|A|C|1804
*
8FZJ|1|A|G|1813
8FZJ|1|A|G|1814
8FZJ|1|A|A|1815
8FZJ|1|A|C|1816
8FZJ|1|A|G|1817
8FZJ|1|A|U|1818
8FZJ|1|A|A|1819
8FZJ|1|A|U|1820
8FZJ|1|A|A|1821

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA