IL_8G29_049
3D structure
- PDB id
- 8G29 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GCAAUG*CAGC
- Length
- 10 nucleotides
- Bulged bases
- 8G29|1|1A|G|1332
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G29_049 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3861
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8G29|1|1A|G|1319
8G29|1|1A|C|1320
8G29|1|1A|A|1321
8G29|1|1A|A|1322
8G29|1|1A|U|1323
8G29|1|1A|G|1324
*
8G29|1|1A|C|1330
8G29|1|1A|A|1331
8G29|1|1A|G|1332
8G29|1|1A|C|1333
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1W
- 50S ribosomal protein L22
- Chain 1X
- 50S ribosomal protein L23
Coloring options: