3D structure

PDB id
8G2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G2B_323 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0716
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

8G2B|1|2a|G|887
8G2B|1|2a|G|888
8G2B|1|2a|A|889
8G2B|1|2a|G|890
8G2B|1|2a|U|891
8G2B|1|2a|A|892
8G2B|1|2a|C|893
8G2B|1|2a|G|894
*
8G2B|1|2a|U|905
8G2B|1|2a|G|906
8G2B|1|2a|A|907
8G2B|1|2a|A|908
8G2B|1|2a|A|909
8G2B|1|2a|C|910

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2l
30S ribosomal protein S12
Chain 2q
30S ribosomal protein S17

Coloring options:


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