IL_8G2D_302

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

8G2D|1|2a|U|244, 8G2D|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2D_302 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0791

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8G2D|1|2a|C|242
8G2D|1|2a|A|243
8G2D|1|2a|U|244
8G2D|1|2a|C|245
8G2D|1|2a|A|246
8G2D|1|2a|G|247
*
8G2D|1|2a|C|277
8G2D|1|2a|G|278
8G2D|1|2a|A|279
8G2D|1|2a|C|280
8G2D|1|2a|G|281
8G2D|1|2a|A|282
8G2D|1|2a|C|283
8G2D|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17