3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8G2D_322 not in the Motif Atlas
Homologous match to IL_5J7L_034
Geometric discrepancy: 0.0715
The information below is about IL_5J7L_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

8G2D|1|2a|G|673
8G2D|1|2a|G|674
8G2D|1|2a|A|675
8G2D|1|2a|A|676
8G2D|1|2a|U|677
8G2D|1|2a|U|678
*
8G2D|1|2a|A|712
8G2D|1|2a|G|713
8G2D|1|2a|G|714
8G2D|1|2a|A|715
8G2D|1|2a|A|716
8G2D|1|2a|C|717

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2f
30S ribosomal protein S6
Chain 2k
30S ribosomal protein S11
Chain 2r
30S ribosomal protein S18

Coloring options:


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