IL_8G2U_005
3D structure
- PDB id
- 8G2U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8G2U_005 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0531
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8G2U|1|A|C|71
8G2U|1|A|G|72
8G2U|1|A|A|73
8G2U|1|A|U|74
8G2U|1|A|G|75
8G2U|1|A|G|76
8G2U|1|A|U|77
8G2U|1|A|A|78
8G2U|1|A|G|79
*
8G2U|1|A|C|97
8G2U|1|A|G|98
8G2U|1|A|A|99
8G2U|1|A|G|100
8G2U|1|A|A|101
8G2U|1|A|G|102
8G2U|1|A|U|103
8G2U|1|A|A|104
8G2U|1|A|G|105
Current chains
- Chain A
- 5S rRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
Coloring options: