IL_8G2U_022

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8G2U|1|B|G|801, 8G2U|1|B|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_022 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0693

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8G2U|1|B|G|674
8G2U|1|B|A|675
8G2U|1|B|A|676
8G2U|1|B|A|677
8G2U|1|B|C|678
*
8G2U|1|B|G|799
8G2U|1|B|A|800
8G2U|1|B|G|801
8G2U|1|B|A|802
8G2U|1|B|U|803
8G2U|1|B|A|804
8G2U|1|B|G|805
8G2U|1|B|C|806

Current chains

Chain B

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15