IL_8G2U_025

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_025 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0926

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8G2U|1|B|U|703
8G2U|1|B|G|704
8G2U|1|B|A|705
8G2U|1|B|A|706
8G2U|1|B|G|707
*
8G2U|1|B|U|724
8G2U|1|B|G|725
8G2U|1|B|G|726
8G2U|1|B|A|727
8G2U|1|B|G|728

Current chains

Chain B

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2