IL_8G2U_125

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8G2U|1|v|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_125 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1556

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8G2U|1|v|G|147
8G2U|1|v|G|148
8G2U|1|v|A|149
8G2U|1|v|U|150
8G2U|1|v|A|151
8G2U|1|v|A|152
8G2U|1|v|C|153
*
8G2U|1|v|G|168
8G2U|1|v|C|169
8G2U|1|v|U|170
8G2U|1|v|A|171
8G2U|1|v|A|172
8G2U|1|v|U|173
8G2U|1|v|A|174
8G2U|1|v|C|175

Current chains

Chain v

16S rRNA

Nearby chains

Chain s

30S ribosomal protein S20