IL_8G2U_136

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_136 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.2023

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8G2U|1|v|G|450
8G2U|1|v|A|451
8G2U|1|v|A|452
8G2U|1|v|G|453
8G2U|1|v|G|454
8G2U|1|v|G|455
*
8G2U|1|v|C|477
8G2U|1|v|A|478
8G2U|1|v|U|479
8G2U|1|v|U|480
8G2U|1|v|G|481
8G2U|1|v|A|482
8G2U|1|v|C|483

Current chains

Chain v

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S16