IL_8G2U_142

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_142 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3107

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_44025.1

Basepair signature

cWW-cWW-tHS-cSH-cSH-cWW

Number of instances in this motif group

3

Unit IDs

8G2U|1|v|G|597
8G2U|1|v|U|598
8G2U|1|v|C|599
*
8G2U|1|v|G|639
8G2U|1|v|A|640
8G2U|1|v|U|641
8G2U|1|v|A|642
8G2U|1|v|C|643

Current chains

Chain v

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S8

Chain p

30S ribosomal protein S17