IL_8G2U_151

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G2U_151 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0909

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8G2U|1|v|G|887
8G2U|1|v|G|888
8G2U|1|v|A|889
8G2U|1|v|G|890
8G2U|1|v|U|891
8G2U|1|v|A|892
8G2U|1|v|C|893
8G2U|1|v|G|894
*
8G2U|1|v|U|905
8G2U|1|v|A|906
8G2U|1|v|A|907
8G2U|1|v|A|908
8G2U|1|v|A|909
8G2U|1|v|C|910

Current chains

Chain v

16S rRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S12