IL_8G31_004

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

8G31|1|A|C|35, 8G31|1|A|C|36, 8G31|1|A|A|45

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8G31_004 not in the Motif Atlas

Geometric match to IL_1MJI_004

Geometric discrepancy: 0.3359

The information below is about IL_1MJI_004

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

8G31|1|A|A|34
8G31|1|A|C|35
8G31|1|A|C|36
8G31|1|A|C|37
8G31|1|A|C|38
*
8G31|1|A|G|44
8G31|1|A|A|45
8G31|1|A|A|46
8G31|1|A|C|47
8G31|1|A|U|48

Current chains

Chain A

5S

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18